PDB ID 1EJI     CHAIN A
Protein name SERINE HYDROXYMETHYLTRANSFERASE
Uniprot Accession P50431
The number of similar proteins 4
The number of binding states 1
The number of binding partners 1

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
1EJI (CHAIN: A)
1 P50431   P50431  

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  1
  0

Sequence information

1   MADRDATLWA   SHEKXLSQPL   KDSDAEVYSI   IKKESNRQRV   GLELIASENF   50
51   ASRAVLEALG   SSLNNKYSEG   YPGQRYYGGT   EFIDELEXLC   QKRALQAYHL   100
101   DPQCWGVNVQ   PYSGSPANFA   VYTALVEPHG   RIXGLDLPDG   GHLTHGFXTD   150
151   KKKISATSIF   FESXPYKVYP   ETGYINYDQL   EENASLFHPK   LIIAGTSCYS   200
201   RNLDYARLRK   IADDNGAYLX   ADXAHISGLV   AAGVVPSPFE   HCHVVTTTTH   250
251   KTLRGCRAGX   IFYRKGVRSV   DPKTGKETYY   ELESLINSAV   FPGLQGGPHN   300
301   HAIAGVAVAL   KQAXTTEFKI   YQLQVLANCR   ALSDALTELG   YKIVTGGSDN   350
351   HLILXDLRSK   GTDGGRAEKV   LEACSIACNK   NTCPGDKSAL   RPSGLRLGTP   400
401   ALTSRGLLEE   DFQKVAHFIH   RGIELTLQIQ   SHXATKATLK   EFKEKLAGDE   450
451   KIQSAVATLR   EEVENFASNF   SLPGLPDF       500

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
13_ASP GLU 8.3kJPN
chr17:18259257
-
- 0.0001 -
42_ASN ASP 8.3kJPN
chr17:18257104
rs201557147
- 0.0009 -
43_ARG GLN 8.3kJPN
chr17:18257100
rs770150583
- 0.0001 -
100_ALA THR 8.3kJPN
chr17:18251699
-
- 0.0001 -
116_GLN ARG 8.3kJPN
chr17:18251650
rs759784953
- 0.0002 -
137_ARG HIS 8.3kJPN
chr17:18250919
rs766011995
- 0.0001 -
145_ASP HIS 8.3kJPN
chr17:18250896
rs768492092
- 0.0003 -
147_GLY ASP gnomAD
chr17:18250889
rs563467894
- 0.00029054 -
156_ASP GLU gnomAD
chr17:18250861
rs558723951
- 0.000151173 -
191_ARG CYS gnomAD
chr17:18244076
rs148701087
- 0.00064225 -
197_LEU PRO gnomAD
chr17:18244057
rs73291881
- 0.000100793 -
204_CYS SER 8.3kJPN
chr17:18243561
-
- 0.0001 -
207_ARG TER 8.3kJPN
chr17:18243552
rs748683840
- 0.0001 -
213_ARG TRP gnomAD
chr17:18243534
rs115185998
- 0.000330246 -
216_LYS ARG gnomAD
chr17:18243524
rs78909145
- 0.00607471 -
216_LYS ARG 8.3kJPN
chr17:18243524
rs78909145
- 0.0001 -
226_MET LEU 8.3kJPN
chr17:18243495
-
- 0.003 -
240_VAL MET gnomAD
chr17:18243453
rs150889470
- 0.000111406 -
249_HIS ARG 8.3kJPN
chr17:18243425
-
- 0.0001 -
308_ALA VAL 8.3kJPN
chr17:18238881
rs1262762031
- 0.0001 -
340_GLU GLN gnomAD
chr17:18236516
rs7215148
- 0.000701564 -
349_ILE THR 8.3kJPN
chr17:18236488
rs758066653
- 0.0001 -
364_ARG HIS gnomAD
chr17:18233949
rs141263245
- 0.000151121 -
364_ARG CYS 8.3kJPN
chr17:18233950
rs758472877
- 0.001 -
394_SER ASN gnomAD
chr17:18232693
rs139056136
- 0.000111838 -
415_GLU GLY 8.3kJPN
chr17:18232630
-
- 0.0001 -
455_ASP TYR gnomAD
chr17:18232153
rs546838005
- 0.00022071 -
455_ASP TYR 8.3kJPN
chr17:18232153
rs546838005
- - -
462_VAL MET 8.3kJPN
chr17:18232135
rs769762115
- 0.0001 -
466_ARG TRP 8.3kJPN
chr17:18232123
rs551074461
- 0.0001 -
475_LEU PHE gnomAD
chr17:18232096
rs1979277
- 0.268191 -
475_LEU PHE 8.3kJPN
chr17:18232096
rs1979277
- 0.0883 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.