PDB ID 1IW7     CHAIN C
Protein name RNA polymerase beta subunit
PDB 1IW7
The number of similar proteins 85
The number of binding states 10
The number of binding partners 9

Molecule viewer


Only interaction residues
#binding
partners
  5
  4
  3
  2
  1
  0

Sequence information

1   MEIKRFGRIR   EVIPLPPLTE   IQVESYRRAL   QADVPPEKRE   NVGIQAAFRE   50
51   TFPIEEEDKG   KGGLVLDFLE   YRLGEPPFPQ   DECREKDLTY   QAPLYARLQL   100
101   IHKDTGLIKE   DEVFLGHIPL   MTEDGSFIIN   GADRVIVSQI   HRSPGVYFTP   150
151   DPARPGRYIA   SIIPLPKRGP   WIDLEVEPNG   VVSMKVNKRK   FPLVLLLRVL   200
201   GYDQETLARE   LGAYGELVQG   LMDESVFAMR   PEEALIRLFT   LLRPGDPPKR   250
251   DKAVAYVYGL   IADPRRYDLG   EAGRYKAEEK   LGIRLSGRTL   ARFEDGEFKD   300
301   EVFLPTLRYL   FALTAGVPGH   EVDDIDHLGN   RRIRTVGELM   TDQFRVGLAR   350
351   LARGVRERML   MGSEDSLTPA   KLVNSRPLEA   AIREFFSRSQ   LSQFKDETNP   400
401   LSSLRHKRRI   SALGPGGLTR   ERAGFDVRDV   HRTHYGRICP   VETPEGANIG   450
451   LITSLAAYAR   VDELGFIRTP   YRRVVGGVVT   DEVVYMTATE   EDRYTIAQAN   500
501   TPLEGNRIAA   ERVVARRKGE   PVIVSPEEVE   FMDVSPKQVF   SVNTNLIPFL   550
551   EHDDANRALM   GSNMQTQAVP   LIRAQAPVVM   TGLEERVVRD   SLAALYAEED   600
601   GEVAKVDGNR   IVVRYEDGRL   VEYPLRRFYR   SNQGTALDQR   PRVVVGQRVR   650
651   KGDLLADGPA   SENGFLALGQ   NVLVAIMPFD   GYNFEDAIVI   SEELLKRDFY   700
701   TSIHIERYEI   EARDTKLGPE   RITRDIPHLS   EAALRDLDEE   GVVRIGAEVK   750
751   PGDILVGRTS   FKGESEPTPE   ERLLRSIFGE   KARDVKDTSL   RVPPGEGGIV   800
801   VRTVRLRRGD   PGVELKPGVR   EVVRVYVAQK   RKLQVGDKLA   NRHGNKGVVA   850
851   KILPVEDMPH   LPDGTPVDVI   LNPLGVPSRM   NLGQILETHL   GLAGYFLGQR   900
901   YISPIFDGAK   EPEIKELLAQ   AFEVYFGKRK   GEGFGVDKRE   VEVLRRAEKL   950
951   GLVTPGKTPE   EQLKELFLQG   KVVLYDGRTG   EPIEGPIVVG   QMFIMKLYHM   1000
1001   VEDKMHARST   GPYSLITQQP   LGGKAQFGGQ   RFGEMEVWAL   EAYGAAHTLQ   1050
1051   EMLTLKSDDI   EGRNAAYEAI   IKGEDVPEPS   VPESFRVLVK   ELQALALDVQ   1100
1101   TLDEKDNPVD   IFEGLASKR         1150

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.