PDB ID 1KSG     CHAIN B
Protein name RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT
Uniprot Accession O43924
The number of similar proteins 35
The number of binding states 4
The number of binding partners 3

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
1KSG (CHAIN: B)
1 Q9D0J4  
2 Monomeric state
3 Q15382  
4 Q92834  

Downdload

Format:

Molecule viewer


Only interaction residues
#binding
partners
  2
  1
  0

Sequence information

1   GSMSAKDERA   REILRGFKLN   WMNLRDAETG   KILWQGTEDL   SVPGVEHEAR   50
51   VPKKILKCKA   VSRELNFSST   EQMEKFRLEQ   KVYFKGQCLE   EWFFEFGFVI   100
101   PNSTNTWQSL   IEAAPESQMM   PASVLTGNVI   IETKFFDDDL   LVSTSRVRLF   150
151   YV           200

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
16_LYS TER ClinVar
chr2:232645779
rs2106294164
Pathogenic - Joubert syndrome 22 [MONDO:MONDO:0014297,MedGen:C3810278,OMIM:615665,Orphanet:2754]
23_ARG GLN 8.3kJPN
chr2:232603881
rs765707721
- 0.0001 -
61_ARG TER ClinVar
chr2:232602807
-
Pathogenic - Joubert syndrome 22 [MONDO:MONDO:0014297,MedGen:C3810278,OMIM:615665,Orphanet:2754]
73_LYS GLU 8.3kJPN
chr2:232602771
-
- 0.0001 -
75_ARG CYS 8.3kJPN
chr2:232602765
rs758019119
- 0.0001 -
136_ASP ASN gnomAD
chr2:232597709
rs142298615
- 0.000393451 -
137_ASP ASN gnomAD
chr2:232597706
rs146510084
- 0.00066223 -
143_SER THR 8.3kJPN
chr2:232597688
-
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.