PDB ID 1KWS     CHAIN A
Protein name BETA-1,3-GLUCURONYLTRANSFERASE 3
Uniprot Accession O94766
The number of similar proteins 6
The number of binding states 1
The number of binding partners 1

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
1KWS (CHAIN: A)
1 O94766  

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  1
  0

Sequence information

1   MTIYVVTPTY   ARLVQKAELV   RLSQTLSLVP   RLHWLLVEDA   EGPTPLVSGL   50
51   LAASGLLFTH   LVVLTPKAQR   LREGEPGWVH   PRGVEQRNKA   LDWLRGRGGA   100
101   VGGEKDPPPP   GTQGVVYFAD   DDNTYSRELF   EEMRWTRGVS   VWPVGLVGGL   150
151   RFEGPQVQDG   RVVGFHTAWE   PSRPFPVDMA   GFAVALPLLL   DKPNAQFDST   200
201   APRGHLESSL   LSHLVDPKDL   EPRAANCTRV   LVWHTRTEKP   KMKQEEQLQR   250
251   QGRGSDPAIE   V         300

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
82_PRO LEU ClinVar
chr11:62387981
rs755601885
Pathogenic - Larsen-like syndrome, B3GAT3 type [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
84_TYR CYS 8.3kJPN
chr11:62387975
-
- 0.0001 -
95_ARG TER ClinVar
chr11:62384794
rs750685646
Pathogenic/Likely pathogenic - Larsen-like syndrome, B3GAT3 type|not provided [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139|MedGen:C3661900]
111_VAL MET ClinVar
chr11:62384746
rs1085307917
Likely pathogenic - not provided [MedGen:CN517202]
112_GLU TER ClinVar
chr11:62384743
-
Pathogenic - Larsen-like syndrome, B3GAT3 type [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
119_PRO LEU 8.3kJPN
chr11:62384721
rs746566185
- 0.0001 -
133_THR ILE 8.3kJPN
chr11:62384679
-
- 0.0001 -
140_PRO LEU ClinVar
chr11:62384658
rs879255269
Pathogenic - MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITHOUT CONGENITAL HEART DEFECTS [-]
161_ARG TRP 8.3kJPN
chr11:62384596
rs765246909
- 0.0001 -
169_ARG TRP ClinVar
chr11:62384572
rs766019547
Pathogenic - MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITHOUT CONGENITAL HEART DEFECTS|Larsen-like syndrome, B3GAT3 type [|MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
183_PRO GLN 8.3kJPN
chr11:62384529
-
- 0.0001 -
185_GLY GLU gnomAD
chr11:62384523
rs140755387
- 0.000652124 -
193_ALA ASP 8.3kJPN
chr11:62384499
-
- 0.0001 -
201_ARG GLN 8.3kJPN
chr11:62384475
rs1242695402
- 0.0006 -
202_GLU TER ClinVar
chr11:62384473
-
Pathogenic - Larsen-like syndrome, B3GAT3 type [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
211_ARG CYS 8.3kJPN
chr11:62384256
rs745645272
- 0.0002 -
223_GLY SER VAR_075371 rs372487178
US - Multiple joint dislocations, short stature, and craniofacial dysmorphism with or without congenital heart defects (JDSCD) [MIM:245600]
223_GLY SER ClinVar
chr11:62384220
rs372487178
Pathogenic - MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITH CONGENITAL HEART DEFECTS [-]
224_LEU GLN ClinVar
chr11:62384216
rs1419830872
Pathogenic - not provided [MedGen:C3661900]
225_ARG TER ClinVar
chr11:62384214
rs377340567
Pathogenic/Likely pathogenic - not provided|MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITHOUT CONGENITAL HEART DEFECTS|Larsen-like syndrome, B3GAT3 type [MedGen:C3661900||MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
231_VAL LEU 8.3kJPN
chr11:62384196
rs769766579
- 0.0002 -
235_ARG GLN 8.3kJPN
chr11:62384183
rs758179182
- 0.0001 -
237_VAL MET gnomAD
chr11:62384178
rs140378202
- 0.00122484 -
255_GLY ALA 8.3kJPN
chr11:62384123
-
- 0.0001 -
258_VAL MET gnomAD
chr11:62384115
rs200860039
- 0.000553089 -
258_VAL MET 8.3kJPN
chr11:62384115
rs200860039
- 0.0016 -
274_THR ASN gnomAD
chr11:62384066
rs112223093
- 0.00134492 -
277_ARG GLN VAR_066624 rs387906937
LP/P - Multiple joint dislocations, short stature, and craniofacial dysmorphism with or without congenital heart defects (JDSCD) [MIM:245600]
277_ARG GLN ClinVar
chr11:62384057
rs387906937
Pathogenic/Likely pathogenic - Larsen-like syndrome, B3GAT3 type|MULTIPLE JOINT DISLOCATIONS, SHORT STATURE, AND CRANIOFACIAL DYSMORPHISM WITH CONGENITAL HEART DEFECTS|not provided [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139||MedGen:C3661900]
297_ARG TRP ClinVar
chr11:62383998
rs759636773
Pathogenic - Larsen-like syndrome, B3GAT3 type [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
310_ARG GLN 8.3kJPN
chr11:62383252
rs779076359
- - -
324_ARG TRP 8.3kJPN
chr11:62383211
rs780467028
- 0.0001 -
327_ARG TRP gnomAD
chr11:62383202
rs200511074
- 0.000167828 -
329_SER TER ClinVar
chr11:62383195
-
Likely pathogenic - Larsen-like syndrome, B3GAT3 type [MONDO:MONDO:0009511,MedGen:C3278404,OMIM:245600,Orphanet:284139]
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.