PDB ID 1N4R     CHAIN B
Protein name Geranylgeranyl transferase type-1 subunit beta
Uniprot Accession P53610
The number of similar proteins 11
The number of binding states 1
The number of binding partners 1

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
1N4R (CHAIN: B)
1 Q04631  

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  1
  0

Sequence information

1   MAATEDDRLA   GSGEGERLDF   LRDRHVRFFQ   RCLQVLPERY   SSLETSRLTI   50
51   AFFALSGLDM   LDSLDVVNKD   DIIEWIYSLQ   VLPTEDRSNL   DRCGFRGSSY   100
101   LGIPFNPSKN   PGTAHPYDSG   HIAMTYTGLS   CLIILGDDLS   RVDKEACLAG   150
151   LRALQLEDGS   FCAVPEGSEN   DMRFVYCASC   ICYMLNNWSG   MDMKKAISYI   200
201   RRSMSYDNGL   AQGAGLESHG   GSTFCGIASL   CLMGKLEEVF   SEKELNRIKR   250
251   WCIMRQQNGY   HGRPNKPVDT   CYSFWVGATL   KLLKIFQYTN   FEKNRNYILS   300
301   TQDRLVGGFA   KWPDSHPDAL   HAYFGICGLS   LMEESGICKV   HPALNVSTRT   350
351   SERLRDLHQS   WKTKDSKQCS   DNVHISS       400

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
38_GLU GLY 8.3kJPN
chr5:114598436
rs763372713
- 0.0001 -
42_SER THR 8.3kJPN
chr5:114598425
rs760017406
- 0.0002 -
62_ASP HIS 8.3kJPN
chr5:114588909
-
- 0.0001 -
72_ILE VAL 8.3kJPN
chr5:114588879
rs779310886
- 0.0001 -
76_ILE VAL 8.3kJPN
chr5:114588867
-
- 0.0001 -
92_ARG HIS 8.3kJPN
chr5:114577288
rs771527463
- 0.0001 -
103_ILE VAL gnomAD
chr5:114577256
rs34918686
- 0.00504313 -
106_ASN THR 8.3kJPN
chr5:114577246
rs751666714
- - -
134_ILE PHE 8.3kJPN
chr5:114573634
-
- 0.0001 -
142_VAL LEU 8.3kJPN
chr5:114573610
-
- 0.0002 -
145_GLU VAL 8.3kJPN
chr5:114573600
-
- 0.0002 -
208_ASN SER 8.3kJPN
chr5:114566708
rs1441630292
- 0.0001 -
258_ASN SER 8.3kJPN
chr5:114557591
-
- 0.0002 -
296_ASN HIS 8.3kJPN
chr5:114552628
-
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.