PDB ID 2COG     CHAIN A
Protein name branched chain aminotransferase 1, cytosolic
Uniprot Accession P54687
The number of similar proteins 30
The number of binding states 1
The number of binding partners 1

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
2COG (CHAIN: A)
1 P54687  

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  1
  0

Sequence information

1   MKDCSNGCSA   ECTGEGGSKE   VVGTFKAKDL   IVTPATILKE   KPDPNNLVFG   50
51   TVFTDHMLTV   EWSSEFGWEK   PHIKPLQNLS   LHPGSSALHY   AVELFEGLKA   100
101   FRGVDNKIRL   FQPNLNMDRM   YRSAVRATLP   VFDKEELLEC   IQQLVKLDQE   150
151   WVPYSTSASL   YIRPTFIGTE   PSLGVKKPTK   ALLFVLLSPV   GPYFSSGTFN   200
201   PVSLWANPKY   VRAWKGGTGD   CKMGGNYGSS   LFAQCEAVDN   GCQQVLWLYG   250
251   EDHQITEVGT   MNLFLYWINE   DGEEELATPP   LDGIILPGVT   RRCILDLAHQ   300
301   WGEFKVSERY   LTMDDLTTAL   EGNRVREMFG   SGTACVVCPV   SDILYKGETI   350
351   HIPTMENGPK   LASRILSKLT   DIQYGREERD   WTIVLS     400

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
23_GLY ARG 8.3kJPN
chr12:25054759
-
- 0.0001 -
43_ASP GLU 8.3kJPN
chr12:25047359
rs147537351
- 0.0068 -
59_THR MET VAR_047681 rs17374285
LB/B - -
59_THR MET gnomAD
chr12:25047312
rs17374285
- 0.00144715 -
61_GLU ALA 8.3kJPN
chr12:25047306
rs201619436
- 0.0163 -
62_TRP LEU 8.3kJPN
chr12:25047303
-
- 0.0001 -
67_GLY TER 8.3kJPN
chr12:25047289
-
- 0.0001 -
76_LEU PHE 8.3kJPN
chr12:25047262
rs747174011
- 0.0002 -
98_LEU SER 8.3kJPN
chr12:25034332
rs765582096
- 0.0006 -
101_PHE LEU 8.3kJPN
chr12:25034324
rs1243658300
- 0.0001 -
115_LEU PHE 8.3kJPN
chr12:25034282
rs775312425
- 0.0002 -
116_ASN SER 8.3kJPN
chr12:25034278
rs780634137
- 0.0001 -
120_MET THR gnomAD
chr12:25034266
rs746608379
- 0.00015654 -
120_MET LYS 8.3kJPN
chr12:25034266
-
- 0.0001 -
122_ARG HIS 8.3kJPN
chr12:25034260
rs1241125592
- 0.0001 -
135_GLU GLY 8.3kJPN
chr12:25031570
rs1216961764
- 0.0001 -
140_CYS SER 8.3kJPN
chr12:25031555
rs199736747
- 0.0012 -
146_LYS ARG gnomAD
chr12:25031537
rs144527883
- 0.000305909 -
177_LYS GLU 8.3kJPN
chr12:25002865
rs1490845798
- 0.0001 -
183_LEU PHE gnomAD
chr12:25002847
rs200941618
- 0.000148633 -
208_PRO SER 8.3kJPN
chr12:25002772
rs201533470
- 0.0001 -
219_GLY ALA 8.3kJPN
chr12:25002738
rs201825281
- 0.0001 -
231_LEU ILE 8.3kJPN
chr12:24995142
-
- 0.0001 -
249_TYR SER 8.3kJPN
chr12:24995087
-
- 0.0008 -
253_HIS ARG 8.3kJPN
chr12:24995075
rs1182969461
- 0.0001 -
264_PHE LEU gnomAD
chr12:24995041
rs371256913
- 0.000168633 -
286_LEU PHE 8.3kJPN
chr12:24989492
rs1467808566
- 0.0001 -
294_ILE LEU gnomAD
chr12:24989468
rs374512227
- 0.000201639 -
321_GLU LYS VAR_019614 rs7313020
LB/B - -
321_GLU LYS gnomAD
chr12:24985740
rs7313020
- 0.00351975 -
330_GLY SER VAR_047682 rs1057204
LB/B - -
343_ILE THR 8.3kJPN
chr12:24985673
rs1354844976
- 0.0001 -
348_GLU LYS 8.3kJPN
chr12:24985659
rs144632372
- 0.0005 -
364_ARG CYS gnomAD
chr12:24982786
rs749915074
- 0.000133676 -
364_ARG CYS 8.3kJPN
chr12:24982786
rs749915074
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.