PDB ID 2D7R     CHAIN A
Protein name Polypeptide N-acetylgalactosaminyltransferase 10
Uniprot Accession Q86SR1
The number of similar proteins 2
The number of binding states 1
The number of binding partners 0

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
2D7R (CHAIN: A)
1 Monomeric state

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  0

Sequence information

1   HHHHHHPGGS   GAAVAPAAGQ   GSHSRQKKTF   FLGDGQKLKD   WHDKEAIRRD   50
51   AQRVGNGEQG   RPYPMTDAER   VDQAYRENGF   NIYVSDKISL   NRSLPDIRHP   100
101   NCNSKRYLET   LPNTSIIIPF   HNEGWSSLLR   TVHSVLNRSP   PELVAEIVLV   150
151   DDFSDREHLK   KPLEDYMALF   PSVRILRTKK   REGLIRTRML   GASVATGDVI   200
201   TFLDSHCEAN   VNWLPPLLDR   IARNRKTIVC   PMIDVIDHDD   FRYETQAGDA   250
251   MRGAFDWEMY   YKRIPIPPEL   QKADPSDPFE   SPVMAGGLFA   VDRKWFWELG   300
301   GYDPGLEIWG   GEQYEISFKV   WMCGGRMEDI   PCSRVGHIYR   KYVPYKVPAG   350
351   VSLARNLKRV   AEVWMDEYAE   YIYQRRPEYR   HLSAGDVAVQ   KKLRSSLNCK   400
401   SFKWFMTKIA   WDLPKFYPPV   EPPAAAWGEI   RNVGTGLCAD   TKHGALGSPL   450
451   RLEGCVRGRG   EAAWNNMQVF   TFTWREDIRP   GDPQHTKKFC   FDAISHTSPV   500
501   TLYDCHSMKG   NQLWKYRKDK   TLYHPVSGSC   MDCSESDHRI   FMNTCNPSSL   550
551   TQQWLFEHTN   STVLEKFNRN         600

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
68_GLY ARG 8.3kJPN
chr5:153674418
-
- 0.0001 -
81_ARG GLN gnomAD
chr5:153674458
rs745377742
- 0.000159255 -
86_ARG HIS gnomAD
chr5:153674473
rs200653755
- 0.000223196 -
87_VAL ILE 8.3kJPN
chr5:153674475
rs140354249
- 0.0002 -
93_GLY GLU 8.3kJPN
chr5:153677516
-
- 0.0001 -
131_ARG GLN 8.3kJPN
chr5:153677630
rs756983564
- 0.0001 -
139_ARG CYS gnomAD
chr5:153709145
rs150192577
- 0.0001872 -
142_GLU LYS gnomAD
chr5:153709154
rs191295808
- 0.000159265 -
158_TRP CYS 8.3kJPN
chr5:153709204
-
- 0.0001 -
170_ASN SER gnomAD
chr5:153709239
rs143021082
- 0.00015131 -
178_ALA THR 8.3kJPN
chr5:153709262
rs757748797
- 0.0002 -
189_ARG GLN 8.3kJPN
chr5:153709296
rs200301599
- 0.0001 -
201_ALA VAL 8.3kJPN
chr5:153755870
-
- 0.0001 -
256_ARG GLN gnomAD
chr5:153760020
rs372572304
- 0.000131467 -
256_ARG GLN 8.3kJPN
chr5:153760020
rs372572304
- 0.0093 -
259_LYS GLN 8.3kJPN
chr5:153760028
-
- 0.0001 -
265_MET THR 8.3kJPN
chr5:153760047
-
- 0.0001 -
273_ASP ASN 8.3kJPN
chr5:153760070
rs780564646
- 0.0001 -
285_ARG GLN 8.3kJPN
chr5:153760107
rs1310370303
- 0.0001 -
292_MET ILE 8.3kJPN
chr5:153760129
rs1323676503
- 0.0001 -
323_ALA THR gnomAD
chr5:153765901
rs139262954
- 0.000123377 -
335_TYR ASP 8.3kJPN
chr5:153765937
rs756637698
- 0.0003 -
359_ARG HIS 8.3kJPN
chr5:153783683
rs745659437
- 0.0001 -
388_ARG GLN 8.3kJPN
chr5:153783770
rs1309622151
- 0.0001 -
402_ALA THR 8.3kJPN
chr5:153789140
rs202225318
- 0.0001 -
424_LYS GLU 8.3kJPN
chr5:153789206
-
- 0.0001 -
433_LYS ARG gnomAD
chr5:153789234
rs139635794
- 0.00103592 -
433_LYS ARG 8.3kJPN
chr5:153789234
rs139635794
- 0.0076 -
453_VAL MET gnomAD
chr5:153789293
rs117925322
- 0.00025744 -
455_PRO SER 8.3kJPN
chr5:153789299
rs773486061
- 0.0001 -
456_PRO LEU 8.3kJPN
chr5:153789303
rs200478812
- 0.0001 -
460_TRP CYS 8.3kJPN
chr5:153789316
rs754234880
- 0.0001 -
464_ARG GLN gnomAD
chr5:153792453
rs142635658
- 0.000653022 -
481_SER PRO 8.3kJPN
chr5:153792503
-
- 0.0004 -
490_ARG GLN gnomAD
chr5:153792531
rs754240894
- 0.000139791 -
490_ARG TER 8.3kJPN
chr5:153792530
rs764597753
- 0.0001 -
492_ARG HIS gnomAD
chr5:153792537
rs779123658
- 0.000124074 -
494_GLU VAL 8.3kJPN
chr5:153792543
-
- 0.0001 -
516_PRO HIS 8.3kJPN
chr5:153795386
-
- 0.0001 -
537_ASP ASN gnomAD
chr5:153795448
rs200092315
- 0.000119323 -
550_ARG HIS 8.3kJPN
chr5:153795488
rs145995359
- 0.0003 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.