PDB ID 2FYB     CHAIN A
Protein name Beta-1,4-galactosyltransferase 1
Uniprot Accession P15291
The number of similar proteins 27
The number of binding states 4
The number of binding partners 2

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
2FYB (CHAIN: A)
1 Monomeric state
2 P15291  
3 P29752  
4 P00709   P00709  

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  2
  1
  0

Sequence information

1   ASMTGGQQMG   RGSASLPACP   EESPLLVGPM   LIEFNMPVDL   ELVAKQNPNV   50
51   KMGGRYAPRD   CVSPHKVAII   IPFRNRQEHL   KYWLYYLHPV   LQRQQLDYGI   100
101   YVINQAGDTI   FNRAKLLNVG   FQEALKDYDY   TCFVFSDVDL   IPMNDHNAYR   150
151   CFSQPRHISV   AMDKFGFSLP   YVQYFGGVSA   LSKQQFLTIN   GFPNNYWGWG   200
201   GEDDDIFNRL   VFRGMSISRP   NAVVGTTRHI   RHSRDKKNEP   NPQRFDRIAH   250
251   TKETMLSDGL   NSLTYQVLDV   QRYPLYTQIT   VDIGTPS     300

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
130_CYS TYR 8.3kJPN
chr9:33166779
-
- 0.0001 -
131_PRO LEU gnomAD
chr9:33166776
rs150774756
- 0.000103712 -
154_VAL MET 8.3kJPN
chr9:33135375
rs750518389
- 0.0001 -
160_ASN ASP 8.3kJPN
chr9:33135357
rs774489888
- 0.0002 -
166_ARG CYS 8.3kJPN
chr9:33135339
rs770241599
- 0.0001 -
171_ASP GLU gnomAD
chr9:33135322
rs146996656
- 0.000135204 -
174_SER CYS 8.3kJPN
chr9:33135314
-
- 0.0001 -
185_ARG CYS 8.3kJPN
chr9:33135282
rs142441831
- 0.0001 -
193_TYR TER ClinVar
chr9:33135256
rs1840249855
Pathogenic - B4GALT1-congenital disorder of glycosylation [MONDO:MONDO:0011772,MedGen:C2931009,OMIM:607091,Orphanet:79332]
217_ALA VAL 8.3kJPN
chr9:33120603
rs780815290
- 0.0016 -
234_GLU LYS 8.3kJPN
chr9:33120553
-
- 0.0001 -
253_PRO ALA gnomAD
chr9:33120496
rs201417912
- 0.000103395 -
257_HIS ARG VAR_054020 rs9169
LB/B - -
257_HIS ARG gnomAD
chr9:33120483
rs9169
- 0.000401622 -
264_SER ALA 8.3kJPN
chr9:33120463
rs755251855
- 0.0001 -
298_LEU VAL gnomAD
chr9:33116056
rs150249236
- 0.000111357 -
301_ASN SER 8.3kJPN
chr9:33116046
rs376696269
- 0.0001 -
329_SER ALA 8.3kJPN
chr9:33113851
-
- 0.0002 -
338_CYS GLY 8.3kJPN
chr9:33113824
-
- 0.0007 -
352_ASN SER VAR_088576 rs551564683
LB/B - -
352_ASN SER ClinVar
chr9:33113781
-
Pathogenic - Combined low LDL and fibrinogen [MONDO:MONDO:0957260,MedGen:C5830484,OMIM:620364]
381_VAL LEU 8.3kJPN
chr9:33113508
-
- 0.0001 -
393_ASP TYR 8.3kJPN
chr9:33113472
-
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.