PDB ID 2GHT     CHAIN A
Protein name Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
Uniprot Accession Q9GZU7
The number of similar proteins 12
The number of binding states 1
The number of binding partners 0

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
2GHT (CHAIN: A)
1 Monomeric state

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  0

Sequence information

1   HQYLLPEAKA   QDSDKICVVI   NLDETLVHSS   FKPVNNADFI   IPVEIDGVVH   50
51   QVYVLKRPHV   DEFLQRMGEL   FECVLFTASL   AKYADPVADL   LDKWGAFRAR   100
101   LFRESCVFHR   GNYVKDLSRL   GRDLRRVLIL   DNSPASYVFH   PDNAVPVASW   150
151   FDNMSDTELH   DLLPFFEQLS   RVDDVYSVLR   Q     200

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
81_PRO SER 8.3kJPN
chr2:219266858
-
- 0.0001 -
88_TYR CYS 8.3kJPN
chr3:38006105
rs773566894
- 0.0001 -
90_LYS ARG gnomAD
chr3:38006111
rs116281186
- 0.00153926 -
93_VAL MET 8.3kJPN
chr2:219266894
rs748115993
- 0.0001 -
95_ILE THR 8.3kJPN
chr3:38006126
rs764709556
- 0.0001 -
123_VAL GLY 8.3kJPN
chr2:219267118
-
- 0.0001 -
128_TYR CYS 8.3kJPN
chr2:219267762
rs1330030953
- 0.0001 -
137_GLU LYS gnomAD
chr3:38012928
rs368304137
- 0.000107539 -
137_GLU LYS 8.3kJPN
chr3:38012928
rs368304137
- 0.0001 -
159_ALA VAL 8.3kJPN
chr2:219267959
-
- 0.0001 -
168_ARG CYS gnomAD
chr3:38017230
rs199822670
- 0.000163209 -
173_ARG GLN 8.3kJPN
chr2:219268001
rs778600045
- 0.0001 -
175_ARG TRP 8.3kJPN
chr2:219268006
rs1459655218
- 0.0001 -
185_ARG CYS gnomAD
chr3:38017281
rs114453306
- 0.000338096 -
185_ARG CYS 8.3kJPN
chr3:38017281
rs114453306
- 0.0002 -
185_ARG HIS 8.3kJPN
chr3:38017282
rs757952569
- 0.0002 -
202_VAL GLY gnomAD
chr2:219268088
rs765265559
- 0.000523852 -
227_ASP ASN gnomAD
chr3:38022254
rs144531491
- 0.00357513 -
230_THR MET gnomAD
chr3:38022264
rs115508245
- 0.000621281 -
230_THR MET 8.3kJPN
chr3:38022264
rs115508245
- 0.0025 -
246_ARG CYS gnomAD
chr2:219269098
rs34580478
- 0.000226741 -
249_ASP ASN 8.3kJPN
chr3:38022320
rs745988993
- 0.0003 -
256_ARG GLY 8.3kJPN
chr3:38022341
-
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.