PDB ID 3BCA     CHAIN A
Protein name O-phosphoseryl-tRNA(Sec) selenium transferase
Uniprot Accession Q6P6M7
The number of similar proteins 3
The number of binding states 1
The number of binding partners 0

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
3BCA (CHAIN: A)
1 Monomeric state

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  0

Sequence information

1   RQGCEARRAH   EHLIRLLLEQ   GKCPEDGWDE   STLELFLHEL   AVMDSNNFLG   50
51   NCGVGEREGR   VASALVARRH   YRFIHGIGRS   GDISAVQPKA   AGSSLLNKIT   100
101   NSLVLNVIKL   AGVHSVASCF   VVPMATGMSL   TLCFLTLRHK   RPKAKYIIWP   150
151   RIDQKSCFKS   MVTAGFEPVV   IENVLEGDEL   RTDLKAVEAK   IQELGPEHIL   200
201   CLHSTTACFA   PRVPDRLEEL   AVICANYDIP   HVVNNAYGLQ   SSKCMHLIQQ   250
251   GARVGRIDAF   VQSLDXNFMV   PVGGAIIAGF   NEPFIQDISK   MYPGRASASP   300
301   SLDVLITLLS   LGCSGYRKLL   KERKEMFVYL   STQLKKLAEA   HNERLLQTPH   350
351   NPISLAMTLK   TIDGHHDKAV   TQLGSMLFTR   QVSGARAVPL   GNVQTVSGHT   400
401   FRGFMSHADN   YPCAYLNAAA   AIGMKMQDVD   LFIKRLDKCL   NIVRKEQTRA   450

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
29_GLU LYS 8.3kJPN
chr4:25161907
-
- 0.0001 -
32_ILE VAL gnomAD
chr4:25161898
rs369863497
- 0.000102547 -
35_LEU PHE 8.3kJPN
chr4:25161889
rs1245194210
- 0.0001 -
46_TRP TER ClinVar
chr4:25160707
-
Pathogenic - not provided [MedGen:C3661900]
89_TYR TER ClinVar
chr4:25160577
-
Pathogenic - not provided [MedGen:C3661900]
95_ILE VAL 8.3kJPN
chr4:25158583
rs1205037339
- 0.0001 -
105_GLN TER ClinVar
chr4:25158553
rs753121056
Pathogenic - not provided [MedGen:C3661900]
119_ASN ASP ClinVar
chr4:25158511
rs1553881788
Likely pathogenic - Inborn genetic diseases [MeSH:D030342,MedGen:C0950123]
137_CYS ARG 8.3kJPN
chr4:25157797
-
- 0.0001 -
142_MET VAL gnomAD
chr4:25157782
rs79599769
- 0.000111348 -
156_ARG TER ClinVar
chr4:25157740
rs1712612053
Pathogenic/Likely pathogenic - not provided|Pontocerebellar hypoplasia type 2D [MedGen:C3661900|MONDO:MONDO:0013438,MedGen:C3151140,OMIM:613811,Orphanet:2524]
156_ARG GLN 8.3kJPN
chr4:25157739
rs776438003
- 0.0001 -
158_LYS GLU 8.3kJPN
chr4:25157734
-
- 0.0001 -
167_TRP TER ClinVar
chr4:25157705
rs1712607979
Pathogenic - not provided [MedGen:C3661900]
169_ARG TER ClinVar
chr4:25157701
-
Pathogenic - not provided [MedGen:C3661900]
212_LEU VAL gnomAD
chr4:25156687
rs202043298
- 0.000198832 -
216_CYS TER ClinVar
chr4:25156673
-
Pathogenic - not provided [MedGen:C3661900]
239_ALA THR ClinVar
chr4:25153671
rs267607035
Pathogenic/Likely pathogenic - Pontocerebellar hypoplasia type 2D|not provided|Pontoneocerebellar hypoplasia [MONDO:MONDO:0013438,MedGen:C3151140,OMIM:613811,Orphanet:2524|MedGen:C3661900|MONDO:MONDO:0020135,MedGen:C1261175,OMIM:PS607596,Orphanet:98523]
256_GLY TER ClinVar
chr4:25153620
rs779387647
Pathogenic/Likely pathogenic - not provided|Pontocerebellar hypoplasia type 2D [MedGen:C3661900|MONDO:MONDO:0013438,MedGen:C3151140,OMIM:613811,Orphanet:2524]
258_GLN TER ClinVar
chr4:25153614
rs1712331034
Pathogenic - not provided [MedGen:C3661900]
271_ARG TER ClinVar
chr4:25146749
rs745870736
Pathogenic/Likely pathogenic - not provided|Inborn genetic diseases|Pontocerebellar hypoplasia type 2D [MedGen:C3661900|MeSH:D030342,MedGen:C0950123|MONDO:MONDO:0013438,MedGen:C3151140,OMIM:613811,Orphanet:2524]
301_SER TER ClinVar
chr4:25146658
-
Pathogenic - not provided [MedGen:C3661900]
307_SER GLY gnomAD
chr4:25146641
rs150309842
- 0.000226989 -
331_SER TER ClinVar
chr4:25146430
-
Pathogenic - not provided [MedGen:C3661900]
333_GLY VAL 8.3kJPN
chr4:25146424
-
- 0.0001 -
334_TYR CYS ClinVar
chr4:25146421
rs267607036
Pathogenic/Likely pathogenic - Pontocerebellar hypoplasia type 2D|not provided [MONDO:MONDO:0013438,MedGen:C3151140,OMIM:613811,Orphanet:2524|MedGen:C3661900]
369_ASN SER 8.3kJPN
chr4:25128900
-
- 0.0001 -
375_MET VAL 8.3kJPN
chr4:25127404
rs760866613
- 0.0002 -
382_GLU LYS 8.3kJPN
chr4:25127383
rs190476418
- 0.0004 -
393_SER TER ClinVar
chr4:25127349
rs991789621
Pathogenic - not provided [MedGen:C3661900]
414_VAL ALA 8.3kJPN
chr4:25125818
-
- 0.0001 -
426_THR ALA gnomAD
chr4:25125783
rs142133435
- 0.000498672 -
431_CYS GLY gnomAD
chr4:25125768
rs572892329
- 0.00038279 -
441_GLY ARG 8.3kJPN
chr4:25125738
rs754992211
- 0.0001 -
452_LYS ASN gnomAD
chr4:25125703
rs2302566
- 0.0662362 -
452_LYS ASN 8.3kJPN
chr4:25125703
rs2302566
- 0.1098 -
465_ARG GLN gnomAD
chr4:25125665
rs115959591
- 0.00190732 -
465_ARG GLN 8.3kJPN
chr4:25125665
rs115959591
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.