PDB ID 1A31     CHAIN A
Protein name PROTEIN (TOPOISOMERASE I)
Uniprot Accession P11387
The number of similar proteins 15
The number of binding states 1
The number of binding partners 0

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state
Binding partners
1A31 (CHAIN: A)
1 Monomeric state

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Format:

Molecule viewer


Only interaction residues
#binding
partners
  0

Sequence information

1   KPKNKDKDKK   VPEPDNKKKK   PKKEEEQKWK   WWEEERYPEG   IKWKFLEHKG   50
51   PVFAPPYEPL   PENVKFYYDG   KVMKLSPKAE   EVATFFAKML   DHEYTTKEIF   100
101   RKNFFKDWRK   EMTNEEKNII   TNLSKCDFTQ   MSQYFKAQTE   ARKQMSKEEK   150
151   LKIKEENEKL   LKEYGFCIMD   NHKERIANFK   IEPPGLFRGR   GNHPKMGMLK   200
201   RRIMPEDIII   NCSKDAKVPS   PPPGHKWKEV   RHDNKVTWLV   SWTENIQGSI   250
251   KYIMLNPSSR   IKGEKDWQKY   ETARRLKKCV   DKIRNQYRED   WKSKEMKVRQ   300
301   RAVALYFIDK   LALRAGNEKE   EGETADTVGC   CSLRVEHINL   HPELDGQEYV   350
351   VEFDFLGKDS   IRYYNKVPVE   KRVFKNLQLF   MENKQPEDDL   FDRLNTGILN   400
401   KHLQDLMEGL   TAKVFRTYNA   SITLQQQLKE   LTAPDENIPA   KILSYNRANR   450
451   AVAILCNHQR   APPKTFEKSM   MNLQTKIDAK   KEQLADARRD   LKSAKADAKV   500
501   MKDAKTKKVV   ESKKKAVQRL   EEQLMKLEVQ   ATDREENKQI   ALGTSKLNXL   550
551   DPRITVAWCK   KWGVPIEKIY   NKTQREKFAW   AIDMADEDYE   F   600

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
291_LYS THR 8.3kJPN
chr20:39726874
-
- 0.0001 -
296_ASN SER gnomAD
chr20:39726889
rs144769453
- 0.000210873 -
304_GLN HIS 8.3kJPN
chr20:39726914
-
- 0.0001 -
326_LYS ARG VAR_036555 -
US - Breast cancer
335_LEU VAL 8.3kJPN
chr20:39728723
-
- 0.0001 -
370_MET THR VAR_010666 -
US - CPT-resistant leukemia
376_ARG GLN 8.3kJPN
chr20:39728847
-
- 0.0001 -
380_GLU LYS 8.3kJPN
chr20:39728858
rs756669367
- 0.0001 -
418_GLU LYS ClinVar
chr20:39729937
rs121434562
Pathogenic - DNA topoisomerase I, camptothecin-resistant [MedGen:C4016020]
452_LYS GLN 8.3kJPN
chr20:39741467
rs1265323416
- 0.0001 -
462_ARG GLY 8.3kJPN
chr20:39741497
rs777034891
- 0.0001 -
469_GLU LYS 8.3kJPN
chr20:39741518
-
- 0.0001 -
471_LYS ARG 8.3kJPN
chr20:39741525
rs765735179
- 0.0006 -
533_ASP GLY VAR_007530 rs267607131
US - CPT-resistant leukemia
546_ARG GLN 8.3kJPN
chr20:39742794
-
- 0.0001 -
596_ILE VAL 8.3kJPN
chr20:39744996
-
- 0.0001 -
722_ASN SER VAR_010667 -
US - CPT-resistant leukemia
729_THR ALA VAR_007531 -
US - CPT-resistant lung cancer
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.